Active Atlas Preprocessing Pipeline
These pages contain documentation for the Kleinfeld lab’s brain preprocessing pipeline. Specifically, the documentation includes:
A description of all necessary modules, classes and methods.
A high level description of the pipeline (non technical documentation).
A description of all the steps in the process (technical documentation).
Instructions on installing the necessary software.
A HOWTO set of instructions to run the actual steps of the pipeline.
Use the side navigation panel to view different documentation topics.